PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006884m
Common NameCARUB_v10006884mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 319aa    MW: 35675 Da    PI: 5.9826
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006884mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.41.4e-28154214259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dD y+WrKYGqK++ g++fprsYYrCt++   +C+++k+v+rs+ d +v+e+tY+g+H+++
  Carubv10006884m 154 DDVYSWRKYGQKDILGAKFPRSYYRCTHRstqNCWATKQVQRSDGDATVFEVTYRGTHTCS 214
                      8***************************9999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.39148211IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-27150215IPR003657WRKY domain
SuperFamilySSF1182907.85E-25152214IPR003657WRKY domain
SMARTSM007744.5E-38153215IPR003657WRKY domain
PfamPF031061.1E-25154213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEGMDMLSWE QKTLLNELLV GLEAAKKLQT RLREAPSPLF SPTTAETNQI LVNQIVSSCE  60
RSLLMLNWSS SPTTVQLIPT PATVVPVVNS GGVPESPASI NGSPRSEEFV DGGGSSDSHH  120
RQDYIFNSKK RKMLPKWSEK VRISPERGLE GPQDDVYSWR KYGQKDILGA KFPRSYYRCT  180
HRSTQNCWAT KQVQRSDGDA TVFEVTYRGT HTCSQAITPP PASPEKQEDT RLRPAISTTT  240
QKPKDLLQSL KSNLTVRTDG LDDGKDVFSF PDTPPFYTYG DFSHVESSPP IFDVADWFNP  300
TVEIDTTFPS FLHESIYY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727480.0AF272748.1 Arabidopsis thaliana WRKY DNA-binding protein 53 (WRKY53) mRNA, complete cds.
GenBankAF3706140.0AF370614.1 Arabidopsis thaliana putative protein (F9D16.280) mRNA, complete cds.
GenBankAK2279380.0AK227938.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-49-L02.
GenBankBT0331130.0BT033113.1 Arabidopsis thaliana unknown protein (At4g23810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285460.10.0hypothetical protein CARUB_v10006884mg
SwissprotQ9SUP60.0WRK53_ARATH; Probable WRKY transcription factor 53
TrEMBLR0H4990.0R0H499_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.7__1920__AT4G23810.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.10.0WRKY family protein